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You can reach Koper from two different airports, the aerodrom Ljubljana in Slovenia and the airport Ronchi Trieste in Italy. Both variants are described below.

Airport transfer

You can choose to book a transfer from any of the airports to Koper. A company that offers this service from both places is GoOpti:
https://www.goopti.com/en/

Aerodrom Ljubljana

You can continue to Koper either by car or by using the public transport.

By car

Follow the highway E61 in the direction Ljubljana and then for Koper. You can rent a car at the airport at different companies, for example Hertz (tel. 04/ 20 16 999). The entire list of providers can be found on the website of the aerodrom:

http://www.lju-airport.si/en/passengers-and-visitors/getting-here/rent-a-car/

By bus or train

You can go by bus from the airport to Ljubljana. The bus schedule can be found on their website:

http://www.lju-airport.si/en/passengers-and-visitors/getting-here/bus/

There are buses driving from the central bus and train station in Ljubljana to Koper. The bus schedule can be queried on the website of the central station:

http://www.ap-ljubljana.si/en/

Alternatively, you can also take the train for Koper. The timetable can be queried on the company's website:

http://www.slo-zeleznice.si/en

 

Friuli Venezia Giulia Airport Trieste

You can continue to Koper either by car or by using the public transport.

By car

Follow the highway A4 in the direction Trieste. From the highway take 
the exit Slovenia - Rabuiese (Škofije) and then follow the signs for 
Koper (Capodistria). You can rent a car at the airport at different 
companies, for example Hertz (tel. +39 0481 777025). The entire list of 
providers can be found on the website of the airport:

https://triesteairport.it/en/airport/arrivals/car-rental/

By bus

From the airport drives the bus nr. 51 to the central bus station in 
Trieste, where you change to the bus for Koper.
Local bus information can be found on the website of the airport:

https://triesteairport.it/en/airport/in-partenza/come-arrivare/by-public-transport/

You can check connecting bus trips from the central bus station in 
Trieste to Koper on the Arriva website:

https://arriva.si/en/

You can continue to Koper either by car or by using the public transport.